CDS
| Accession Number | TCMCG016C26981 |
| gbkey | CDS |
| Protein Id | OMO53518.1 |
| Location | complement(join(20511..21068,21727..23665,24180..24343,24430..24531,24635..24751,24858..24926,25161..25287,25384..25589,25871..26299)) |
| Organism | Corchorus capsularis |
| locus_tag | CCACVL1_28587 |
Protein
| Length | 1236aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA215142; BioSample:SAMN03290679; |
| db_source | AWWV01015167.1 |
| Definition | Pre-mRNA polyadenylation factor Fip1 [Corchorus capsularis] |
| Locus_tag | CCACVL1_28587 |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Fip1 motif |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko03019 [VIEW IN KEGG] |
| KEGG_ko |
ko:K14405
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03015
[VIEW IN KEGG] map03015 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGCTACCATGGATGATGATTTTGGTGAGTTATACGCCGACGTTGAAATACAAGCTAGCTCAGCTCTCGGCGTATTGTGCAATGAAAAGGAAGACGATCACCCTATCGATGGTGCCAAAAGCACGAGTGCGGATGAGAAATTCGTAATCGATTCTGTTTCGGAAGATAGTGACAGCGATGACGACTTGAACATTGTGTTGAATGATGATGATTGCCAGAAGTTTCCGGTTTCCGGTGCGAAGAGTCACGCCGGTGGCAATGAGGAGGATGAAAATGGTGATTTTGGTGTGAAGGATTCCCGGTCGGATAAGACTTCGAGACGGTTGGAACCGGTTGGTGATGAACCGGAATTTAATTCTAGTGCGAATGGTGTAGATAGAGGAACCGGAGCTAAAATTGGGGTTCATTCCCAATTTTCTCACTTCAAGTATATGAGACCTCATCCAAGTAATATGAGAGTTAATGGGTGCACTGGTGTTTCATCATTCTCTTCTATGTCGGGAAGAGGTGATTTGGAGGATGATTTTTACAGCCAAAAAAGAGGTGGAAGCTTGGTTCAAGTTGCTAACAGACGTGCTAATACAAGTTCACATGCATATCAATTTGGATATGGTTTTTCTCTTCCATGGTATAGGACTATTTTTGGTGTGAATATGGATGCATTTGAGGAGAAACCTTGGAGGAATCCTGGTGTGGATATAACAGATTTTTTTAACTTTGGCTTCAATGAGGACAGTTGGAAACAATACTGCAACTCCCTGGAGGAATTTCAGAAGCAGTCATGTAGGTCCACTAGGATTCCTGTGTATTATTATCCAAAACTTGAGCAGGCTCATGAAGCTGAGGCTGGGCGCAAGGCAGCAACTGAAGAAGCTATGAGTGGGGGTGTAGCAGAACTTGAATCGTCATTCAAATGTGCTGATGGAGAAGAGATGTCCTTGAAATTGCCAAAAGGAAGAGCAATTCATGTTGAAGACAGCATCATTGAACGCCAACCATCCATGGATCTAAGGTGTCCACGTTTTCAGGATTCCGATGTTATTATACAGATAACTGTGCAAGATTCCGCTGTGGATTCTTCTATCTCTGCAAAGGAAGAACTAGGTCATGGTGGCAAGGCGTCAGAATCTAGGAAGCTGGATGCAGAGTATGATAGAAGTGATGACCTGTCTAAAAGGGTCAGAAATGTGTCCACATCTTCTTCTTCTGGAAGGTCTGTGCAGCACAGAACTGCATCTAATCAAACATCACTAGAGACTAATAATCATGGAAATGACAAGCTCTCTGAAACAGATAGGGGTTGCCATCCAAATGTGGATGCTTGCTTTTCAGAAGCAAAAGCAATTGCTGAAGCAATGGAAACAAAAAATAAGGAACTTGAAGTGCCTTGCAGAAATACTGACCAGTCAGATTCTTGCATTGTTGAAACAGAACCATCACTTGAAGATCAGAGTCATTTTAGCCCTATGATTTCCTTCTCTGAATGCTATTCTGAAGAAAGTTCCGAGGACAGTGTTTATGCTGCTTCCATTGAAGTTGCAAGTCCATCAAGAAGGCAATCACTGGCTTATGACACTGGATTACAGAAGTCAGTTGCATCTTATAATAAGAGTTCCAGAAGTGATGGGCCCAAAACAAAATCAGATGACGGAGAAGGTTACTCAGTACATATGACTACCATTCCAGATAAGCAAAAGCATAAGAGTTGGAGACAGCGCCATTCTGTGAAACAAAGGATGTTTCTTGAAAGTGGTGATGACACTTCTCCAAAATCAGATGCCGAGGATGATAAGAAAAGATATCCAAGATGTAGAGTTCCTATTGAGGAAGGAAGGAAGCATCATTGTGGTAGACCTAATGGTATTACTGATTCGAAGATACACCCGAAAGCCTGCAATGACACTTCCCTTTGGTCAAATGCGCTGGAACTCTATGATAACGATTACTCGTCTGATTATTGTGGAAGACAGAAAGGTTGCCCACAAGATCGTGCTTCTCATGACAGAGAAGATTCCTCTTACTACAGGGAGAGAGGGCCTTGTGCTGACATTCATCTTCGGAGTGTCGGCACAAAAGATCATCTGAGCTTAAAAGAAGACTCGGATCAAACTGTTAGAAAAAGTTGGACTCGAAAGGAGTTTTATCATGAAAGCAGAGTTGGAATAGATAAGGAAGATGACACGGATAGGTTTTGGTATTGTGGACGAAGACTTCCTGCTCAGCATGGTTTGGGTCCTCACCCTTACAGGGAATCTGGGAGGTTGATCTCAAGGTATTCCTCTGCTTCAAAGCAAAGAGGTATTCAATGGAGAAGAGGAAATGACAGACTCAAACTTAGGAAGAAAATTGGTCACAATTATTGTCTATTAGGTTATAAGCATGAAGATGAATGGTTAAGAGAAAATTATGGTAGATCCATTCCATTCGCTCATTGTGAAAGGGATACGTTTGAACCATATGAGCGATTCCTACCGCCAATTGAAAGAGAAGTCAAAGTTTCTGGAAGAAAAGGTAGATATGTTGATGCTGCCTATTTCAATTGGGATAGATCATGGCCTATGGAAAGTGATGATGAGTATCAGAGAGACATGTGCAGTAGAGCCTTGGCAAGTGACAGAGAACCTTCCACACCTAACAGAAGAAGGTGGTCTAATACTGTAGCATCAAGAAAAGAGGCATATGACTCAGAATTAATTGAAACATACAATAGACATGAGAGAATAGTATGTCATAACGAAGACAGAGACAGTGGTTGGTTTGGTTATTATGATTGTAATGATGATGGTGAAGATGATATCTTGCAAAATGATAGTCAAGTTCGGTCATGGAGGAGAGGCCATAGTCAGCGATCAAGATTACTTGACTTGAAGGAGAATACACTACTTGTAAGTGATAGATTGTTTGCTCAAGAGGTCTCTTTTTCCTGTAAAAATAATTCTAGGCATGAGATAATTCATGCTAGGGATGGATCACTCCGGGATGAGATGCATATTAATGATTTGATGTTGGTGAATAATGGAAACAAAATGACAAGTAAAAGAAGTAATGCCAACTGTCATAAAAGAAATGCTATTGCTAGGTATAGAGGAGAGCATGGGCAGATGGTCCTGAAGGACAGGGATCCAGCTGACTTGATTATTGGGGAAGGAAAGTCTTATGGAAGACACTCAGACGGCAGAAGGTTATTATGCAATGGAAGGCTTGAAAAGATTGGCTTTAAATTTCCCATGGAGCGGAATTCTTCAAGGACGTGGAATGATACTTGTGGAGGCAAAGCATTTAAGACAGACAACCCAAATACAGATAGCAGAAGAAATAATGAGAAGCAGCTTGACACATTTCCAGCTACAGAATGCAACCAAGATCCGGATATTGAGGAGGGTCAGATCATATCTGAAGAACAAAGTATTGGAGGTGTTAACCTGAAAAAGGAAAATGCTTCTGAAACTATGATGCAAAGGGGCAGAGGGAAGAGAAGAACAGTGCACGATAACAATGCTTCTGCCAATAGAGCTGTGGTTGAATATGACAACAAAAGGATACTGGAGACACTAGCAAAGATGGAGAAACGAAGGGAAAGGTTTAAAGATCCCATCATAACGGAAAGGGAACCAGACAAGACTTGTGAGCTCCAAGTTGAATTGGTTGTTGAGACAAAGGAAATAAAGCATCAGAGGCCTGCTCGAAAGAGGCGGTGGGGTGTAAGTTAG |
| Protein: MATMDDDFGELYADVEIQASSALGVLCNEKEDDHPIDGAKSTSADEKFVIDSVSEDSDSDDDLNIVLNDDDCQKFPVSGAKSHAGGNEEDENGDFGVKDSRSDKTSRRLEPVGDEPEFNSSANGVDRGTGAKIGVHSQFSHFKYMRPHPSNMRVNGCTGVSSFSSMSGRGDLEDDFYSQKRGGSLVQVANRRANTSSHAYQFGYGFSLPWYRTIFGVNMDAFEEKPWRNPGVDITDFFNFGFNEDSWKQYCNSLEEFQKQSCRSTRIPVYYYPKLEQAHEAEAGRKAATEEAMSGGVAELESSFKCADGEEMSLKLPKGRAIHVEDSIIERQPSMDLRCPRFQDSDVIIQITVQDSAVDSSISAKEELGHGGKASESRKLDAEYDRSDDLSKRVRNVSTSSSSGRSVQHRTASNQTSLETNNHGNDKLSETDRGCHPNVDACFSEAKAIAEAMETKNKELEVPCRNTDQSDSCIVETEPSLEDQSHFSPMISFSECYSEESSEDSVYAASIEVASPSRRQSLAYDTGLQKSVASYNKSSRSDGPKTKSDDGEGYSVHMTTIPDKQKHKSWRQRHSVKQRMFLESGDDTSPKSDAEDDKKRYPRCRVPIEEGRKHHCGRPNGITDSKIHPKACNDTSLWSNALELYDNDYSSDYCGRQKGCPQDRASHDREDSSYYRERGPCADIHLRSVGTKDHLSLKEDSDQTVRKSWTRKEFYHESRVGIDKEDDTDRFWYCGRRLPAQHGLGPHPYRESGRLISRYSSASKQRGIQWRRGNDRLKLRKKIGHNYCLLGYKHEDEWLRENYGRSIPFAHCERDTFEPYERFLPPIEREVKVSGRKGRYVDAAYFNWDRSWPMESDDEYQRDMCSRALASDREPSTPNRRRWSNTVASRKEAYDSELIETYNRHERIVCHNEDRDSGWFGYYDCNDDGEDDILQNDSQVRSWRRGHSQRSRLLDLKENTLLVSDRLFAQEVSFSCKNNSRHEIIHARDGSLRDEMHINDLMLVNNGNKMTSKRSNANCHKRNAIARYRGEHGQMVLKDRDPADLIIGEGKSYGRHSDGRRLLCNGRLEKIGFKFPMERNSSRTWNDTCGGKAFKTDNPNTDSRRNNEKQLDTFPATECNQDPDIEEGQIISEEQSIGGVNLKKENASETMMQRGRGKRRTVHDNNASANRAVVEYDNKRILETLAKMEKRRERFKDPIITEREPDKTCELQVELVVETKEIKHQRPARKRRWGVS |